STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006167annotation not available (261 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
    
   0.894
TRMT10B
tRNA methyltransferase 10B.
   
  
 0.692
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
  
 0.681
SARS1
seryl-tRNA synthetase 1.
    
 
 0.677
METTL1
Methyltransferase like 1.
   
  
 0.650
PSEN2
Presenilin 2.
    
 
 0.634
EFCAB3
EF-hand calcium binding domain 3.
    
 
 0.628
PSEN1
Presenilin 1.
    
 
 0.606
ENSCAPP00000003595
annotation not available
    
 
 0.596
EEF1AKMT2
EEF1A lysine methyltransferase 2.
   
  
 0.595
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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