Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006194annotation not available (60 aa)    
Predicted Functional Partners:
ATP5PD
ATP synthase peripheral stalk subunit d.
   
 0.993
ATP5MC1
ATP synthase membrane subunit c locus 1.
   
 0.991
ATP5PF
ATP synthase peripheral stalk subunit F6.
   
 0.988
ENSCAPP00000007856
annotation not available
   
 0.988
ATP5F1D
ATP synthase F1 subunit delta.
   
  0.982
ATP5PB
ATP synthase peripheral stalk-membrane subunit b.
   
  0.982
ENSCAPP00000004902
annotation not available
   
 0.980
ATP5F1B
ATP synthase F1 subunit beta.
   
  0.974
ATP5F1A
ATP synthase F1 subunit alpha.
   
  0.974
ATP5MC2
ATP synthase membrane subunit c locus 2.
   
 0.964
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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