ENSCAPP00000006202 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSCAPP00000006202

annotation not available (160 aa)

Predicted Functional Partners:

ENSCAPP00000013033

0.932

ENSCAPP00000008781

0.930

PBX2

0.928

TSHZ3

0.921

LMX1B

0.851

FAM222A

0.845

WWTR1

0.808

YAP1

0.808

MEIS3

0.706

CRBN

0.648

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRBN	ENSCAPP00000006202	ENSCAPP00000010079	ENSCAPP00000006202	Cereblon.	annotation not available	0.648
ENSCAPP00000006202	CRBN	ENSCAPP00000006202	ENSCAPP00000010079	annotation not available	Cereblon.	0.648
ENSCAPP00000006202	ENSCAPP00000008781	ENSCAPP00000006202	ENSCAPP00000008781	annotation not available	annotation not available	0.930
ENSCAPP00000006202	ENSCAPP00000013033	ENSCAPP00000006202	ENSCAPP00000013033	annotation not available	annotation not available	0.932
ENSCAPP00000006202	FAM222A	ENSCAPP00000006202	ENSCAPP00000014949	annotation not available	Family with sequence similarity 222 member A.	0.845
ENSCAPP00000006202	LMX1B	ENSCAPP00000006202	ENSCAPP00000017003	annotation not available	LIM homeobox transcription factor 1 beta.	0.851
ENSCAPP00000006202	MEIS3	ENSCAPP00000006202	ENSCAPP00000017770	annotation not available	Meis homeobox 3.	0.706
ENSCAPP00000006202	PBX2	ENSCAPP00000006202	ENSCAPP00000010217	annotation not available	PBX homeobox 2.	0.928
ENSCAPP00000006202	TSHZ3	ENSCAPP00000006202	ENSCAPP00000001208	annotation not available	Teashirt zinc finger homeobox 3.	0.921
ENSCAPP00000006202	WWTR1	ENSCAPP00000006202	ENSCAPP00000012523	annotation not available	WW domain containing transcription regulator 1.	0.808
ENSCAPP00000006202	YAP1	ENSCAPP00000006202	ENSCAPP00000015430	annotation not available	Yes associated protein 1.	0.808
ENSCAPP00000008781	ENSCAPP00000006202	ENSCAPP00000008781	ENSCAPP00000006202	annotation not available	annotation not available	0.930
ENSCAPP00000008781	ENSCAPP00000013033	ENSCAPP00000008781	ENSCAPP00000013033	annotation not available	annotation not available	0.761
ENSCAPP00000008781	FAM222A	ENSCAPP00000008781	ENSCAPP00000014949	annotation not available	Family with sequence similarity 222 member A.	0.959
ENSCAPP00000008781	LMX1B	ENSCAPP00000008781	ENSCAPP00000017003	annotation not available	LIM homeobox transcription factor 1 beta.	0.959
ENSCAPP00000008781	MEIS3	ENSCAPP00000008781	ENSCAPP00000017770	annotation not available	Meis homeobox 3.	0.609
ENSCAPP00000008781	PBX2	ENSCAPP00000008781	ENSCAPP00000010217	annotation not available	PBX homeobox 2.	0.868
ENSCAPP00000008781	TSHZ3	ENSCAPP00000008781	ENSCAPP00000001208	annotation not available	Teashirt zinc finger homeobox 3.	0.499
ENSCAPP00000013033	ENSCAPP00000006202	ENSCAPP00000013033	ENSCAPP00000006202	annotation not available	annotation not available	0.932
ENSCAPP00000013033	ENSCAPP00000008781	ENSCAPP00000013033	ENSCAPP00000008781	annotation not available	annotation not available	0.761