STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPM4Transient receptor potential cation channel subfamily M member 4. (874 aa)    
Predicted Functional Partners:
SCN5A
Sodium voltage-gated channel alpha subunit 5.
     
 0.940
SCN3B
Sodium voltage-gated channel beta subunit 3.
     
 0.924
SCN10A
Sodium voltage-gated channel alpha subunit 10.
     
 0.921
SCN2B
Sodium voltage-gated channel beta subunit 2.
     
 0.918
SCN1B
Sodium voltage-gated channel beta subunit 1.
     
 0.918
SCNN1G
Sodium channel epithelial 1 gamma subunit.
     
 0.917
ENSCAPP00000017224
annotation not available
     
 0.916
SCN4A
Sodium voltage-gated channel alpha subunit 4.
     
 0.914
SCNN1A
Sodium channel epithelial 1 alpha subunit.
     
 0.912
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.910
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.