RBM47 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM47

RNA binding motif protein 47. (591 aa)

Predicted Functional Partners:

EPRS1

0.995

ENSCAPP00000015862

0.730

APOBEC2

0.704

ENSCAPP00000000576

0.684

ENSCAPP00000004781

0.684

ENSCAPP00000003691

0.659

ENSCAPP00000014392

0.659

TBL2

0.612

ENSCAPP00000002274

0.607

HNRNPLL

0.598

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APOBEC2	ENSCAPP00000015862	ENSCAPP00000014782	ENSCAPP00000015862	Apolipoprotein B mRNA editing enzyme catalytic subunit 2.	annotation not available	0.613
APOBEC2	RBM47	ENSCAPP00000014782	ENSCAPP00000006243	Apolipoprotein B mRNA editing enzyme catalytic subunit 2.	RNA binding motif protein 47.	0.704
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.999
ENSCAPP00000000576	EPRS1	ENSCAPP00000000576	ENSCAPP00000002836	annotation not available	glutamyl-prolyl-tRNA synthetase 1.	0.998
ENSCAPP00000000576	RBM47	ENSCAPP00000000576	ENSCAPP00000006243	annotation not available	RNA binding motif protein 47.	0.684
ENSCAPP00000000576	TBL2	ENSCAPP00000000576	ENSCAPP00000011881	annotation not available	Transducin beta like 2.	0.479
ENSCAPP00000002274	ENSCAPP00000003691	ENSCAPP00000002274	ENSCAPP00000003691	annotation not available	annotation not available	0.884
ENSCAPP00000002274	ENSCAPP00000014392	ENSCAPP00000002274	ENSCAPP00000014392	annotation not available	annotation not available	0.884
ENSCAPP00000002274	EPRS1	ENSCAPP00000002274	ENSCAPP00000002836	annotation not available	glutamyl-prolyl-tRNA synthetase 1.	0.480
ENSCAPP00000002274	RBM47	ENSCAPP00000002274	ENSCAPP00000006243	annotation not available	RNA binding motif protein 47.	0.607
ENSCAPP00000003691	ENSCAPP00000002274	ENSCAPP00000003691	ENSCAPP00000002274	annotation not available	annotation not available	0.884
ENSCAPP00000003691	HNRNPLL	ENSCAPP00000003691	ENSCAPP00000012855	annotation not available	Heterogeneous nuclear ribonucleoprotein L like.	0.813
ENSCAPP00000003691	RBM47	ENSCAPP00000003691	ENSCAPP00000006243	annotation not available	RNA binding motif protein 47.	0.659
ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	annotation not available	annotation not available	0.999
ENSCAPP00000004781	EPRS1	ENSCAPP00000004781	ENSCAPP00000002836	annotation not available	glutamyl-prolyl-tRNA synthetase 1.	0.998
ENSCAPP00000004781	RBM47	ENSCAPP00000004781	ENSCAPP00000006243	annotation not available	RNA binding motif protein 47.	0.684
ENSCAPP00000004781	TBL2	ENSCAPP00000004781	ENSCAPP00000011881	annotation not available	Transducin beta like 2.	0.479
ENSCAPP00000014392	ENSCAPP00000002274	ENSCAPP00000014392	ENSCAPP00000002274	annotation not available	annotation not available	0.884
ENSCAPP00000014392	HNRNPLL	ENSCAPP00000014392	ENSCAPP00000012855	annotation not available	Heterogeneous nuclear ribonucleoprotein L like.	0.813
ENSCAPP00000014392	RBM47	ENSCAPP00000014392	ENSCAPP00000006243	annotation not available	RNA binding motif protein 47.	0.659