Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SGMS1Sphingomyelin synthase 1. (419 aa)    
Predicted Functional Partners:
SMPD1
Sphingomyelin phosphodiesterase 1.
     
 0.983
DEGS2
Delta 4-desaturase, sphingolipid 2.
   
 
 0.973
CERS2
Ceramide synthase 2.
     
 0.956
ENSCAPP00000006015
annotation not available
     
 0.953
UGCG
UDP-glucose ceramide glucosyltransferase.
     
 0.951
DEGS1
Delta 4-desaturase, sphingolipid 1.
   
 
 0.951
CERS3
Ceramide synthase 3.
     
 0.950
ASAH2
N-acylsphingosine amidohydrolase 2.
 
   
 0.950
ASAH1
N-acylsphingosine amidohydrolase 1.
     
 0.949
SMPD2
Sphingomyelin phosphodiesterase 2.
     
 0.948
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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