ENSCAPP00000006251 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000006251

annotation not available (105 aa)

Predicted Functional Partners:

ENSCAPP00000001550

0.996

MACROH2A1

0.983

MACROH2A2

0.947

ENSCAPP00000000256

0.941

ENSCAPP00000010565

0.941

ENSCAPP00000003947

0.931

H2BC18

0.923

H2BC3

0.915

CENPA

0.898

ENSCAPP00000001855

0.896

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CENPA	ENSCAPP00000000256	ENSCAPP00000018126	ENSCAPP00000000256	Centromere protein A.	annotation not available	0.913
CENPA	ENSCAPP00000001550	ENSCAPP00000018126	ENSCAPP00000001550	Centromere protein A.	annotation not available	0.994
CENPA	ENSCAPP00000001855	ENSCAPP00000018126	ENSCAPP00000001855	Centromere protein A.	annotation not available	0.898
CENPA	ENSCAPP00000003947	ENSCAPP00000018126	ENSCAPP00000003947	Centromere protein A.	annotation not available	0.913
CENPA	ENSCAPP00000006251	ENSCAPP00000018126	ENSCAPP00000006251	Centromere protein A.	annotation not available	0.898
CENPA	ENSCAPP00000010565	ENSCAPP00000018126	ENSCAPP00000010565	Centromere protein A.	annotation not available	0.913
CENPA	H2BC18	ENSCAPP00000018126	ENSCAPP00000012296	Centromere protein A.	H2B clustered histone 18.	0.948
CENPA	H2BC3	ENSCAPP00000018126	ENSCAPP00000010326	Centromere protein A.	H2B clustered histone 3.	0.898
CENPA	MACROH2A1	ENSCAPP00000018126	ENSCAPP00000014257	Centromere protein A.	macroH2A.1 histone.	0.949
CENPA	MACROH2A2	ENSCAPP00000018126	ENSCAPP00000004347	Centromere protein A.	macroH2A.2 histone.	0.836
ENSCAPP00000000256	CENPA	ENSCAPP00000000256	ENSCAPP00000018126	annotation not available	Centromere protein A.	0.913
ENSCAPP00000000256	ENSCAPP00000001550	ENSCAPP00000000256	ENSCAPP00000001550	annotation not available	annotation not available	0.989
ENSCAPP00000000256	ENSCAPP00000001855	ENSCAPP00000000256	ENSCAPP00000001855	annotation not available	annotation not available	0.941
ENSCAPP00000000256	ENSCAPP00000003947	ENSCAPP00000000256	ENSCAPP00000003947	annotation not available	annotation not available	0.452
ENSCAPP00000000256	ENSCAPP00000006251	ENSCAPP00000000256	ENSCAPP00000006251	annotation not available	annotation not available	0.941
ENSCAPP00000000256	H2BC18	ENSCAPP00000000256	ENSCAPP00000012296	annotation not available	H2B clustered histone 18.	0.977
ENSCAPP00000000256	H2BC3	ENSCAPP00000000256	ENSCAPP00000010326	annotation not available	H2B clustered histone 3.	0.941
ENSCAPP00000000256	MACROH2A1	ENSCAPP00000000256	ENSCAPP00000014257	annotation not available	macroH2A.1 histone.	0.814
ENSCAPP00000000256	MACROH2A2	ENSCAPP00000000256	ENSCAPP00000004347	annotation not available	macroH2A.2 histone.	0.677
ENSCAPP00000001550	CENPA	ENSCAPP00000001550	ENSCAPP00000018126	annotation not available	Centromere protein A.	0.994