STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMC1Transmembrane channel like 1. (724 aa)    
Predicted Functional Partners:
CIB2
Calcium and integrin binding family member 2.
    
 0.919
CIB3
Calcium and integrin binding family member 3.
    
 0.917
LHFPL5
LHFPL tetraspan subfamily member 5.
   
 
 0.824
TMIE
Transmembrane inner ear.
   
 
 0.802
CIB1
Calcium and integrin binding 1.
    
 0.797
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.753
ENSCAPP00000000270
annotation not available
    
 0.664
ENSCAPP00000006586
annotation not available
    
 0.664
ENSCAPP00000013350
annotation not available
    
 0.664
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.636
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.