Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT5Synaptotagmin 5. (386 aa)    
Predicted Functional Partners:
SYT1
Synaptotagmin 1.
   
   0.988
SYT2
Synaptotagmin 2.
   
   0.973
SNAP25
Synaptosome associated protein 25.
   
 0.762
ATP6V1C2
ATPase H+ transporting V1 subunit C2.
    
   0.754
ENSCAPP00000005959
annotation not available
   
 0.740
STX1A
Syntaxin 1A.
   
 0.710
STX1B
Syntaxin 1B.
   
 0.704
NCKIPSD
NCK interacting protein with SH3 domain.
      
 0.661
ARFRP1
ADP ribosylation factor related protein 1.
      
 0.657
UBXN2B
UBX domain protein 2B.
      
 0.657
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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