STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H6Zinc finger CCCH-type containing 6. (1030 aa)    
Predicted Functional Partners:
WDR82
WD repeat domain 82.
   
 0.918
NUDT21
Nudix hydrolase 21.
    
 0.916
SYMPK
Symplekin.
   
 0.914
WDR33
WD repeat domain 33.
    
 0.912
ENSCAPP00000002198
annotation not available
   
 0.912
ENSCAPP00000007721
annotation not available
    
 0.912
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.912
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.907
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.907
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.906
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.