PRDX3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PRDX3

Peroxiredoxin 3. (224 aa)

Predicted Functional Partners:

PRDX5

0.993

ENSCAPP00000006417

0.991

SOD1

0.920

ENSCAPP00000009620

0.904

ENSCAPP00000010372

0.904

NDUFS1

0.903

ENSCAPP00000013812

0.877

ENSCAPP00000012542

0.876

XIAP

0.872

PRDX2

0.864

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000006417	ENSCAPP00000009620	ENSCAPP00000006417	ENSCAPP00000009620	annotation not available	annotation not available	0.959
ENSCAPP00000006417	ENSCAPP00000010372	ENSCAPP00000006417	ENSCAPP00000010372	annotation not available	annotation not available	0.959
ENSCAPP00000006417	ENSCAPP00000012542	ENSCAPP00000006417	ENSCAPP00000012542	annotation not available	annotation not available	0.661
ENSCAPP00000006417	ENSCAPP00000013812	ENSCAPP00000006417	ENSCAPP00000013812	annotation not available	annotation not available	0.958
ENSCAPP00000006417	PRDX2	ENSCAPP00000006417	ENSCAPP00000017445	annotation not available	Peroxiredoxin 2.	0.876
ENSCAPP00000006417	PRDX3	ENSCAPP00000006417	ENSCAPP00000006309	annotation not available	Peroxiredoxin 3.	0.991
ENSCAPP00000006417	PRDX5	ENSCAPP00000006417	ENSCAPP00000000828	annotation not available	Peroxiredoxin 5.	0.964
ENSCAPP00000006417	SOD1	ENSCAPP00000006417	ENSCAPP00000014006	annotation not available	Superoxide dismutase 1.	0.569
ENSCAPP00000009620	ENSCAPP00000006417	ENSCAPP00000009620	ENSCAPP00000006417	annotation not available	annotation not available	0.959
ENSCAPP00000009620	ENSCAPP00000012542	ENSCAPP00000009620	ENSCAPP00000012542	annotation not available	annotation not available	0.810
ENSCAPP00000009620	ENSCAPP00000013812	ENSCAPP00000009620	ENSCAPP00000013812	annotation not available	annotation not available	0.791
ENSCAPP00000009620	PRDX2	ENSCAPP00000009620	ENSCAPP00000017445	annotation not available	Peroxiredoxin 2.	0.971
ENSCAPP00000009620	PRDX3	ENSCAPP00000009620	ENSCAPP00000006309	annotation not available	Peroxiredoxin 3.	0.904
ENSCAPP00000009620	PRDX5	ENSCAPP00000009620	ENSCAPP00000000828	annotation not available	Peroxiredoxin 5.	0.926
ENSCAPP00000009620	SOD1	ENSCAPP00000009620	ENSCAPP00000014006	annotation not available	Superoxide dismutase 1.	0.757
ENSCAPP00000010372	ENSCAPP00000006417	ENSCAPP00000010372	ENSCAPP00000006417	annotation not available	annotation not available	0.959
ENSCAPP00000010372	ENSCAPP00000012542	ENSCAPP00000010372	ENSCAPP00000012542	annotation not available	annotation not available	0.810
ENSCAPP00000010372	ENSCAPP00000013812	ENSCAPP00000010372	ENSCAPP00000013812	annotation not available	annotation not available	0.791
ENSCAPP00000010372	PRDX2	ENSCAPP00000010372	ENSCAPP00000017445	annotation not available	Peroxiredoxin 2.	0.971
ENSCAPP00000010372	PRDX3	ENSCAPP00000010372	ENSCAPP00000006309	annotation not available	Peroxiredoxin 3.	0.904