Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006310annotation not available (269 aa)    
Predicted Functional Partners:
CUL4A
Cullin 4A.
    
 0.998
DDB1
Damage specific DNA binding protein 1.
    
 0.998
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.997
RBX1
Ring-box 1.
    
 0.996
ENSCAPP00000010526
annotation not available
     
 0.996
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
     
 0.996
DDA1
DET1 and DDB1 associated 1.
    
  0.994
UVSSA
UV stimulated scaffold protein A.
    
 0.993
XPC
XPC complex subunit, DNA damage recognition and repair factor.
     
 0.993
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
     
 0.992
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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