ENSCAPP00000006313 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCAPP00000006313

annotation not available (94 aa)

Predicted Functional Partners:

RPL35

0.968

RPS18

0.965

RPS5

0.955

RPS9

0.954

RPL5

0.954

ENSCAPP00000006028

0.952

RPL23

0.952

ENSCAPP00000017536

0.947

ZRANB1

0.938

RPL13A

0.930

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000006028	ENSCAPP00000006313	ENSCAPP00000006028	ENSCAPP00000006313	annotation not available	annotation not available	0.952
ENSCAPP00000006028	ENSCAPP00000017536	ENSCAPP00000006028	ENSCAPP00000017536	annotation not available	annotation not available	0.999
ENSCAPP00000006028	RPL13A	ENSCAPP00000006028	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.999
ENSCAPP00000006028	RPL23	ENSCAPP00000006028	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.999
ENSCAPP00000006028	RPL35	ENSCAPP00000006028	ENSCAPP00000006561	annotation not available	Ribosomal protein L35.	0.999
ENSCAPP00000006028	RPL5	ENSCAPP00000006028	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.999
ENSCAPP00000006028	RPS18	ENSCAPP00000006028	ENSCAPP00000018580	annotation not available	Ribosomal protein S18.	0.999
ENSCAPP00000006028	RPS5	ENSCAPP00000006028	ENSCAPP00000017552	annotation not available	Ribosomal protein S5.	0.999
ENSCAPP00000006028	RPS9	ENSCAPP00000006028	ENSCAPP00000012452	annotation not available	Ribosomal protein S9.	0.999
ENSCAPP00000006313	ENSCAPP00000006028	ENSCAPP00000006313	ENSCAPP00000006028	annotation not available	annotation not available	0.952
ENSCAPP00000006313	ENSCAPP00000017536	ENSCAPP00000006313	ENSCAPP00000017536	annotation not available	annotation not available	0.947
ENSCAPP00000006313	RPL13A	ENSCAPP00000006313	ENSCAPP00000004820	annotation not available	Ribosomal protein L13a.	0.930
ENSCAPP00000006313	RPL23	ENSCAPP00000006313	ENSCAPP00000017030	annotation not available	Ribosomal protein L23.	0.952
ENSCAPP00000006313	RPL35	ENSCAPP00000006313	ENSCAPP00000006561	annotation not available	Ribosomal protein L35.	0.968
ENSCAPP00000006313	RPL5	ENSCAPP00000006313	ENSCAPP00000013511	annotation not available	Ribosomal protein L5.	0.954
ENSCAPP00000006313	RPS18	ENSCAPP00000006313	ENSCAPP00000018580	annotation not available	Ribosomal protein S18.	0.965
ENSCAPP00000006313	RPS5	ENSCAPP00000006313	ENSCAPP00000017552	annotation not available	Ribosomal protein S5.	0.955
ENSCAPP00000006313	RPS9	ENSCAPP00000006313	ENSCAPP00000012452	annotation not available	Ribosomal protein S9.	0.954
ENSCAPP00000006313	ZRANB1	ENSCAPP00000006313	ENSCAPP00000002196	annotation not available	Zinc finger RANBP2-type containing 1.	0.938
ENSCAPP00000017536	ENSCAPP00000006028	ENSCAPP00000017536	ENSCAPP00000006028	annotation not available	annotation not available	0.999