ENSCAPP00000006326 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSCAPP00000006326

annotation not available (470 aa)

Predicted Functional Partners:

ITGAL

0.998

ICAM1

0.993

ITGA5

0.975

ITGA4

0.973

ITGAM

0.972

TLN1

0.964

SYK

0.963

ENSCAPP00000013226

0.960

ITGAV

0.957

ITGAD

0.949

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000006326	ENSCAPP00000013226	ENSCAPP00000006326	ENSCAPP00000013226	annotation not available	annotation not available	0.960
ENSCAPP00000006326	ICAM1	ENSCAPP00000006326	ENSCAPP00000008670	annotation not available	Intercellular adhesion molecule 1.	0.993
ENSCAPP00000006326	ITGA4	ENSCAPP00000006326	ENSCAPP00000007913	annotation not available	Integrin subunit alpha 4.	0.973
ENSCAPP00000006326	ITGA5	ENSCAPP00000006326	ENSCAPP00000008342	annotation not available	Integrin subunit alpha 5.	0.975
ENSCAPP00000006326	ITGAD	ENSCAPP00000006326	ENSCAPP00000016154	annotation not available	Integrin subunit alpha D.	0.949
ENSCAPP00000006326	ITGAL	ENSCAPP00000006326	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.998
ENSCAPP00000006326	ITGAM	ENSCAPP00000006326	ENSCAPP00000016232	annotation not available	Integrin subunit alpha M.	0.972
ENSCAPP00000006326	ITGAV	ENSCAPP00000006326	ENSCAPP00000009667	annotation not available	Integrin subunit alpha V.	0.957
ENSCAPP00000006326	SYK	ENSCAPP00000006326	ENSCAPP00000012665	annotation not available	Spleen associated tyrosine kinase.	0.963
ENSCAPP00000006326	TLN1	ENSCAPP00000006326	ENSCAPP00000000944	annotation not available	Talin 1.	0.964
ENSCAPP00000013226	ENSCAPP00000006326	ENSCAPP00000013226	ENSCAPP00000006326	annotation not available	annotation not available	0.960
ENSCAPP00000013226	ICAM1	ENSCAPP00000013226	ENSCAPP00000008670	annotation not available	Intercellular adhesion molecule 1.	0.962
ENSCAPP00000013226	ITGA4	ENSCAPP00000013226	ENSCAPP00000007913	annotation not available	Integrin subunit alpha 4.	0.991
ENSCAPP00000013226	ITGA5	ENSCAPP00000013226	ENSCAPP00000008342	annotation not available	Integrin subunit alpha 5.	0.979
ENSCAPP00000013226	ITGAD	ENSCAPP00000013226	ENSCAPP00000016154	annotation not available	Integrin subunit alpha D.	0.948
ENSCAPP00000013226	ITGAL	ENSCAPP00000013226	ENSCAPP00000014751	annotation not available	Integrin subunit alpha L.	0.992
ENSCAPP00000013226	ITGAM	ENSCAPP00000013226	ENSCAPP00000016232	annotation not available	Integrin subunit alpha M.	0.938
ENSCAPP00000013226	ITGAV	ENSCAPP00000013226	ENSCAPP00000009667	annotation not available	Integrin subunit alpha V.	0.944
ENSCAPP00000013226	SYK	ENSCAPP00000013226	ENSCAPP00000012665	annotation not available	Spleen associated tyrosine kinase.	0.877
ENSCAPP00000013226	TLN1	ENSCAPP00000013226	ENSCAPP00000000944	annotation not available	Talin 1.	0.512