STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX30SRY-box transcription factor 30. (679 aa)    
Predicted Functional Partners:
DMRT1
Doublesex and mab-3 related transcription factor 1.
    
 0.744
POU5F2
POU domain class 5, transcription factor 2.
    
 0.682
ENSCAPP00000010002
annotation not available
    
 0.682
EGR2
Early growth response 2.
    
 0.665
ENSCAPP00000000033
annotation not available
   
 0.636
RUNX2
RUNX family transcription factor 2.
   
 0.636
RUNX3
RUNX family transcription factor 3.
   
 0.636
JUP
Junction plakoglobin.
    
 0.624
CTNNB1
Catenin beta 1.
    
 0.624
NR5A2
Nuclear receptor subfamily 5 group A member 2.
    
 0.623
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.