GTPBP2 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GTPBP2

GTP binding protein 2. (501 aa)

Predicted Functional Partners:

COASY

0.582

FA2H

0.578

DCAF17

0.578

CP

0.578

PLA2G6

0.578

ATP13A2

0.578

MRRF

0.567

ENSCAPP00000002903

0.564

PUS3

0.564

HTT

0.564

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP13A2	COASY	ENSCAPP00000017276	ENSCAPP00000001410	ATPase cation transporting 13A2.	Coenzyme A synthase.	0.582
ATP13A2	CP	ENSCAPP00000017276	ENSCAPP00000008235	ATPase cation transporting 13A2.	Ceruloplasmin.	0.617
ATP13A2	DCAF17	ENSCAPP00000017276	ENSCAPP00000005561	ATPase cation transporting 13A2.	DDB1 and CUL4 associated factor 17.	0.578
ATP13A2	FA2H	ENSCAPP00000017276	ENSCAPP00000004296	ATPase cation transporting 13A2.	Fatty acid 2-hydroxylase.	0.578
ATP13A2	GTPBP2	ENSCAPP00000017276	ENSCAPP00000006336	ATPase cation transporting 13A2.	GTP binding protein 2.	0.578
ATP13A2	PLA2G6	ENSCAPP00000017276	ENSCAPP00000015394	ATPase cation transporting 13A2.	Phospholipase A2 group VI.	0.578
COASY	ATP13A2	ENSCAPP00000001410	ENSCAPP00000017276	Coenzyme A synthase.	ATPase cation transporting 13A2.	0.582
COASY	CP	ENSCAPP00000001410	ENSCAPP00000008235	Coenzyme A synthase.	Ceruloplasmin.	0.664
COASY	DCAF17	ENSCAPP00000001410	ENSCAPP00000005561	Coenzyme A synthase.	DDB1 and CUL4 associated factor 17.	0.617
COASY	FA2H	ENSCAPP00000001410	ENSCAPP00000004296	Coenzyme A synthase.	Fatty acid 2-hydroxylase.	0.598
COASY	GTPBP2	ENSCAPP00000001410	ENSCAPP00000006336	Coenzyme A synthase.	GTP binding protein 2.	0.582
COASY	PLA2G6	ENSCAPP00000001410	ENSCAPP00000015394	Coenzyme A synthase.	Phospholipase A2 group VI.	0.592
CP	ATP13A2	ENSCAPP00000008235	ENSCAPP00000017276	Ceruloplasmin.	ATPase cation transporting 13A2.	0.617
CP	COASY	ENSCAPP00000008235	ENSCAPP00000001410	Ceruloplasmin.	Coenzyme A synthase.	0.664
CP	DCAF17	ENSCAPP00000008235	ENSCAPP00000005561	Ceruloplasmin.	DDB1 and CUL4 associated factor 17.	0.578
CP	FA2H	ENSCAPP00000008235	ENSCAPP00000004296	Ceruloplasmin.	Fatty acid 2-hydroxylase.	0.578
CP	GTPBP2	ENSCAPP00000008235	ENSCAPP00000006336	Ceruloplasmin.	GTP binding protein 2.	0.578
CP	PLA2G6	ENSCAPP00000008235	ENSCAPP00000015394	Ceruloplasmin.	Phospholipase A2 group VI.	0.578
DCAF17	ATP13A2	ENSCAPP00000005561	ENSCAPP00000017276	DDB1 and CUL4 associated factor 17.	ATPase cation transporting 13A2.	0.578
DCAF17	COASY	ENSCAPP00000005561	ENSCAPP00000001410	DDB1 and CUL4 associated factor 17.	Coenzyme A synthase.	0.617