ENSCAPP00000006340 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000006340

annotation not available (240 aa)

Predicted Functional Partners:

DES

0.959

ENSCAPP00000002343

0.957

ENSCAPP00000008125

0.957

ENSCAPP00000000778

0.934

ENSCAPP00000000818

0.934

ENSCAPP00000005141

0.934

ENSCAPP00000014719

0.934

DSG4

0.925

DSG1

0.866

HMGB1

0.856

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DES	ENSCAPP00000000778	ENSCAPP00000004465	ENSCAPP00000000778	Desmin.	annotation not available	0.800
DES	ENSCAPP00000000818	ENSCAPP00000004465	ENSCAPP00000000818	Desmin.	annotation not available	0.800
DES	ENSCAPP00000002343	ENSCAPP00000004465	ENSCAPP00000002343	Desmin.	annotation not available	0.848
DES	ENSCAPP00000005141	ENSCAPP00000004465	ENSCAPP00000005141	Desmin.	annotation not available	0.800
DES	ENSCAPP00000006340	ENSCAPP00000004465	ENSCAPP00000006340	Desmin.	annotation not available	0.959
DES	ENSCAPP00000008125	ENSCAPP00000004465	ENSCAPP00000008125	Desmin.	annotation not available	0.848
DES	ENSCAPP00000014719	ENSCAPP00000004465	ENSCAPP00000014719	Desmin.	annotation not available	0.800
DSG1	DSG4	ENSCAPP00000004744	ENSCAPP00000004049	Desmoglein 1.	Desmoglein 4.	0.912
DSG1	ENSCAPP00000000778	ENSCAPP00000004744	ENSCAPP00000000778	Desmoglein 1.	annotation not available	0.810
DSG1	ENSCAPP00000000818	ENSCAPP00000004744	ENSCAPP00000000818	Desmoglein 1.	annotation not available	0.810
DSG1	ENSCAPP00000005141	ENSCAPP00000004744	ENSCAPP00000005141	Desmoglein 1.	annotation not available	0.810
DSG1	ENSCAPP00000006340	ENSCAPP00000004744	ENSCAPP00000006340	Desmoglein 1.	annotation not available	0.866
DSG1	ENSCAPP00000014719	ENSCAPP00000004744	ENSCAPP00000014719	Desmoglein 1.	annotation not available	0.810
DSG4	DSG1	ENSCAPP00000004049	ENSCAPP00000004744	Desmoglein 4.	Desmoglein 1.	0.912
DSG4	ENSCAPP00000000778	ENSCAPP00000004049	ENSCAPP00000000778	Desmoglein 4.	annotation not available	0.815
DSG4	ENSCAPP00000000818	ENSCAPP00000004049	ENSCAPP00000000818	Desmoglein 4.	annotation not available	0.815
DSG4	ENSCAPP00000005141	ENSCAPP00000004049	ENSCAPP00000005141	Desmoglein 4.	annotation not available	0.815
DSG4	ENSCAPP00000006340	ENSCAPP00000004049	ENSCAPP00000006340	Desmoglein 4.	annotation not available	0.925
DSG4	ENSCAPP00000014719	ENSCAPP00000004049	ENSCAPP00000014719	Desmoglein 4.	annotation not available	0.815
ENSCAPP00000000778	DES	ENSCAPP00000000778	ENSCAPP00000004465	annotation not available	Desmin.	0.800