RCBTB1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCBTB1

RCC1 and BTB domain containing protein 1. (372 aa)

Predicted Functional Partners:

ADGRB1

0.705

ENSCAPP00000016784

0.705

ADGRB2

0.705

RANBP2

0.680

CUL3

0.652

ENSCAPP00000001550

0.645

NEK6

0.608

ENSCAPP00000017531

0.608

RNF8

0.592

ENSCAPP00000002664

0.583

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRB1	ENSCAPP00000001550	ENSCAPP00000001337	ENSCAPP00000001550	Adhesion G protein-coupled receptor B1.	annotation not available	0.632
ADGRB1	RANBP2	ENSCAPP00000001337	ENSCAPP00000009214	Adhesion G protein-coupled receptor B1.	RAN binding protein 2.	0.998
ADGRB1	RCBTB1	ENSCAPP00000001337	ENSCAPP00000006346	Adhesion G protein-coupled receptor B1.	RCC1 and BTB domain containing protein 1.	0.705
ADGRB2	ENSCAPP00000001550	ENSCAPP00000017112	ENSCAPP00000001550	Adhesion G protein-coupled receptor B2.	annotation not available	0.632
ADGRB2	RANBP2	ENSCAPP00000017112	ENSCAPP00000009214	Adhesion G protein-coupled receptor B2.	RAN binding protein 2.	0.998
ADGRB2	RCBTB1	ENSCAPP00000017112	ENSCAPP00000006346	Adhesion G protein-coupled receptor B2.	RCC1 and BTB domain containing protein 1.	0.705
CUL3	ENSCAPP00000001550	ENSCAPP00000016657	ENSCAPP00000001550	Cullin 3.	annotation not available	0.446
CUL3	ENSCAPP00000002664	ENSCAPP00000016657	ENSCAPP00000002664	Cullin 3.	annotation not available	0.563
CUL3	RCBTB1	ENSCAPP00000016657	ENSCAPP00000006346	Cullin 3.	RCC1 and BTB domain containing protein 1.	0.652
ENSCAPP00000001550	ADGRB1	ENSCAPP00000001550	ENSCAPP00000001337	annotation not available	Adhesion G protein-coupled receptor B1.	0.632
ENSCAPP00000001550	ADGRB2	ENSCAPP00000001550	ENSCAPP00000017112	annotation not available	Adhesion G protein-coupled receptor B2.	0.632
ENSCAPP00000001550	CUL3	ENSCAPP00000001550	ENSCAPP00000016657	annotation not available	Cullin 3.	0.446
ENSCAPP00000001550	ENSCAPP00000016784	ENSCAPP00000001550	ENSCAPP00000016784	annotation not available	annotation not available	0.632
ENSCAPP00000001550	RANBP2	ENSCAPP00000001550	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.540
ENSCAPP00000001550	RCBTB1	ENSCAPP00000001550	ENSCAPP00000006346	annotation not available	RCC1 and BTB domain containing protein 1.	0.645
ENSCAPP00000001550	RNF8	ENSCAPP00000001550	ENSCAPP00000018481	annotation not available	Ring finger protein 8.	0.604
ENSCAPP00000002664	CUL3	ENSCAPP00000002664	ENSCAPP00000016657	annotation not available	Cullin 3.	0.563
ENSCAPP00000002664	RANBP2	ENSCAPP00000002664	ENSCAPP00000009214	annotation not available	RAN binding protein 2.	0.492
ENSCAPP00000002664	RCBTB1	ENSCAPP00000002664	ENSCAPP00000006346	annotation not available	RCC1 and BTB domain containing protein 1.	0.583
ENSCAPP00000016784	ENSCAPP00000001550	ENSCAPP00000016784	ENSCAPP00000001550	annotation not available	annotation not available	0.632