STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNIP1Smad nuclear interacting protein 1. (357 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.998
SF3B1
Splicing factor 3b subunit 1.
    
 0.997
PHF5A
PHD finger protein 5A.
    
 0.997
BUD13
BUD13 homolog.
   
 0.997
SF3A3
Splicing factor 3a subunit 3.
   
 0.996
SF3B3
Splicing factor 3b subunit 3.
    
 0.995
ENSCAPP00000001654
annotation not available
    
 0.995
SF3B2
Splicing factor 3b subunit 2.
   
 0.995
SF3B4
Splicing factor 3b subunit 4.
    
 0.995
CWC27
CWC27 spliceosome associated cyclophilin.
    
 0.995
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.