ENSCAPP00000006353 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000006353

annotation not available (239 aa)

Predicted Functional Partners:

WARS2

0.689

EPAS1

0.583

C17orf67

0.582

RFLNA

0.581

EPS8

0.572

NUCKS1

0.572

ENSCAPP00000009857

0.570

SLC45A2

0.568

COL11A2

0.553

HSPG2

0.551

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C17orf67	ENSCAPP00000006353	ENSCAPP00000016058	ENSCAPP00000006353	Chromosome 17 open reading frame 67.	annotation not available	0.582
C17orf67	RFLNA	ENSCAPP00000016058	ENSCAPP00000007547	Chromosome 17 open reading frame 67.	Refilin A.	0.570
COL11A2	ENSCAPP00000006353	ENSCAPP00000015157	ENSCAPP00000006353	Collagen type XI alpha 2 chain.	annotation not available	0.553
COL11A2	HSPG2	ENSCAPP00000015157	ENSCAPP00000018608	Collagen type XI alpha 2 chain.	Heparan sulfate proteoglycan 2.	0.663
COL11A2	NUCKS1	ENSCAPP00000015157	ENSCAPP00000012967	Collagen type XI alpha 2 chain.	Nuclear casein kinase and cyclin dependent kinase substrate 1.	0.597
ENSCAPP00000006353	C17orf67	ENSCAPP00000006353	ENSCAPP00000016058	annotation not available	Chromosome 17 open reading frame 67.	0.582
ENSCAPP00000006353	COL11A2	ENSCAPP00000006353	ENSCAPP00000015157	annotation not available	Collagen type XI alpha 2 chain.	0.553
ENSCAPP00000006353	ENSCAPP00000009857	ENSCAPP00000006353	ENSCAPP00000009857	annotation not available	annotation not available	0.570
ENSCAPP00000006353	EPAS1	ENSCAPP00000006353	ENSCAPP00000006671	annotation not available	Endothelial PAS domain protein 1.	0.583
ENSCAPP00000006353	EPS8	ENSCAPP00000006353	ENSCAPP00000007222	annotation not available	Epidermal growth factor receptor pathway substrate 8.	0.572
ENSCAPP00000006353	HSPG2	ENSCAPP00000006353	ENSCAPP00000018608	annotation not available	Heparan sulfate proteoglycan 2.	0.551
ENSCAPP00000006353	NUCKS1	ENSCAPP00000006353	ENSCAPP00000012967	annotation not available	Nuclear casein kinase and cyclin dependent kinase substrate 1.	0.572
ENSCAPP00000006353	RFLNA	ENSCAPP00000006353	ENSCAPP00000007547	annotation not available	Refilin A.	0.581
ENSCAPP00000006353	SLC45A2	ENSCAPP00000006353	ENSCAPP00000005194	annotation not available	Solute carrier family 45 member 2.	0.568
ENSCAPP00000006353	WARS2	ENSCAPP00000006353	ENSCAPP00000016735	annotation not available	Tryptophanyl tRNA synthetase 2, mitochondrial.	0.689
ENSCAPP00000009857	ENSCAPP00000006353	ENSCAPP00000009857	ENSCAPP00000006353	annotation not available	annotation not available	0.570
EPAS1	ENSCAPP00000006353	ENSCAPP00000006671	ENSCAPP00000006353	Endothelial PAS domain protein 1.	annotation not available	0.583
EPAS1	WARS2	ENSCAPP00000006671	ENSCAPP00000016735	Endothelial PAS domain protein 1.	Tryptophanyl tRNA synthetase 2, mitochondrial.	0.683
EPS8	ENSCAPP00000006353	ENSCAPP00000007222	ENSCAPP00000006353	Epidermal growth factor receptor pathway substrate 8.	annotation not available	0.572
HSPG2	COL11A2	ENSCAPP00000018608	ENSCAPP00000015157	Heparan sulfate proteoglycan 2.	Collagen type XI alpha 2 chain.	0.663