ARHGEF17 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARHGEF17

Rho guanine nucleotide exchange factor 17. (1756 aa)

Predicted Functional Partners:

STING1

0.754

ENSCAPP00000013410

0.661

GNA13

0.591

GNA12

0.591

ENSCAPP00000006439

0.584

ENSCAPP00000012909

0.584

ARHGAP24

0.582

RND1

0.569

ENSCAPP00000006795

0.569

ENSCAPP00000017843

0.568

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP24	ARHGEF17	ENSCAPP00000006410	ENSCAPP00000006360	Rho GTPase activating protein 24.	Rho guanine nucleotide exchange factor 17.	0.582
ARHGAP24	ENSCAPP00000006439	ENSCAPP00000006410	ENSCAPP00000006439	Rho GTPase activating protein 24.	annotation not available	0.593
ARHGAP24	ENSCAPP00000006795	ENSCAPP00000006410	ENSCAPP00000006795	Rho GTPase activating protein 24.	annotation not available	0.541
ARHGAP24	ENSCAPP00000012909	ENSCAPP00000006410	ENSCAPP00000012909	Rho GTPase activating protein 24.	annotation not available	0.593
ARHGAP24	ENSCAPP00000017843	ENSCAPP00000006410	ENSCAPP00000017843	Rho GTPase activating protein 24.	annotation not available	0.544
ARHGAP24	RND1	ENSCAPP00000006410	ENSCAPP00000002218	Rho GTPase activating protein 24.	Rho family GTPase 1.	0.541
ARHGEF17	ARHGAP24	ENSCAPP00000006360	ENSCAPP00000006410	Rho guanine nucleotide exchange factor 17.	Rho GTPase activating protein 24.	0.582
ARHGEF17	ENSCAPP00000006439	ENSCAPP00000006360	ENSCAPP00000006439	Rho guanine nucleotide exchange factor 17.	annotation not available	0.584
ARHGEF17	ENSCAPP00000006795	ENSCAPP00000006360	ENSCAPP00000006795	Rho guanine nucleotide exchange factor 17.	annotation not available	0.569
ARHGEF17	ENSCAPP00000012909	ENSCAPP00000006360	ENSCAPP00000012909	Rho guanine nucleotide exchange factor 17.	annotation not available	0.584
ARHGEF17	ENSCAPP00000013410	ENSCAPP00000006360	ENSCAPP00000013410	Rho guanine nucleotide exchange factor 17.	annotation not available	0.661
ARHGEF17	ENSCAPP00000017843	ENSCAPP00000006360	ENSCAPP00000017843	Rho guanine nucleotide exchange factor 17.	annotation not available	0.568
ARHGEF17	GNA12	ENSCAPP00000006360	ENSCAPP00000010435	Rho guanine nucleotide exchange factor 17.	G protein subunit alpha 12.	0.591
ARHGEF17	GNA13	ENSCAPP00000006360	ENSCAPP00000008291	Rho guanine nucleotide exchange factor 17.	G protein subunit alpha 13.	0.591
ARHGEF17	RND1	ENSCAPP00000006360	ENSCAPP00000002218	Rho guanine nucleotide exchange factor 17.	Rho family GTPase 1.	0.569
ARHGEF17	STING1	ENSCAPP00000006360	ENSCAPP00000000856	Rho guanine nucleotide exchange factor 17.	Stimulator of interferon response cGAMP interactor 1.	0.754
ENSCAPP00000006439	ARHGAP24	ENSCAPP00000006439	ENSCAPP00000006410	annotation not available	Rho GTPase activating protein 24.	0.593
ENSCAPP00000006439	ARHGEF17	ENSCAPP00000006439	ENSCAPP00000006360	annotation not available	Rho guanine nucleotide exchange factor 17.	0.584
ENSCAPP00000006439	ENSCAPP00000006795	ENSCAPP00000006439	ENSCAPP00000006795	annotation not available	annotation not available	0.586
ENSCAPP00000006439	ENSCAPP00000017843	ENSCAPP00000006439	ENSCAPP00000017843	annotation not available	annotation not available	0.599