GRID2IP protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

GRID2IP

Grid2 interacting protein. (855 aa)

Predicted Functional Partners:

GRID2

0.936

ENSCAPP00000012033

0.936

GRID1

0.808

USH1C

0.678

ENSCAPP00000008920

0.625

ENSCAPP00000013522

0.606

IFT88

0.601

PLEK2

0.595

ENSCAPP00000016912

0.594

TRAF3IP1

0.589

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000008920	ENSCAPP00000013522	ENSCAPP00000008920	ENSCAPP00000013522	annotation not available	annotation not available	0.544
ENSCAPP00000008920	ENSCAPP00000016912	ENSCAPP00000008920	ENSCAPP00000016912	annotation not available	annotation not available	0.751
ENSCAPP00000008920	GRID2IP	ENSCAPP00000008920	ENSCAPP00000006381	annotation not available	Grid2 interacting protein.	0.625
ENSCAPP00000008920	USH1C	ENSCAPP00000008920	ENSCAPP00000015667	annotation not available	USH1 protein network component harmonin.	0.625
ENSCAPP00000012033	GRID1	ENSCAPP00000012033	ENSCAPP00000003790	annotation not available	Glutamate ionotropic receptor delta type subunit 1.	0.957
ENSCAPP00000012033	GRID2IP	ENSCAPP00000012033	ENSCAPP00000006381	annotation not available	Grid2 interacting protein.	0.936
ENSCAPP00000013522	ENSCAPP00000008920	ENSCAPP00000013522	ENSCAPP00000008920	annotation not available	annotation not available	0.544
ENSCAPP00000013522	ENSCAPP00000016912	ENSCAPP00000013522	ENSCAPP00000016912	annotation not available	annotation not available	0.446
ENSCAPP00000013522	GRID2IP	ENSCAPP00000013522	ENSCAPP00000006381	annotation not available	Grid2 interacting protein.	0.606
ENSCAPP00000013522	PLEK2	ENSCAPP00000013522	ENSCAPP00000015023	annotation not available	Pleckstrin 2.	0.452
ENSCAPP00000013522	USH1C	ENSCAPP00000013522	ENSCAPP00000015667	annotation not available	USH1 protein network component harmonin.	0.581
ENSCAPP00000016912	ENSCAPP00000008920	ENSCAPP00000016912	ENSCAPP00000008920	annotation not available	annotation not available	0.751
ENSCAPP00000016912	ENSCAPP00000013522	ENSCAPP00000016912	ENSCAPP00000013522	annotation not available	annotation not available	0.446
ENSCAPP00000016912	GRID2IP	ENSCAPP00000016912	ENSCAPP00000006381	annotation not available	Grid2 interacting protein.	0.594
ENSCAPP00000016912	PLEK2	ENSCAPP00000016912	ENSCAPP00000015023	annotation not available	Pleckstrin 2.	0.526
ENSCAPP00000016912	USH1C	ENSCAPP00000016912	ENSCAPP00000015667	annotation not available	USH1 protein network component harmonin.	0.474
GRID1	ENSCAPP00000012033	ENSCAPP00000003790	ENSCAPP00000012033	Glutamate ionotropic receptor delta type subunit 1.	annotation not available	0.957
GRID1	GRID2	ENSCAPP00000003790	ENSCAPP00000003615	Glutamate ionotropic receptor delta type subunit 1.	Glutamate ionotropic receptor delta type subunit 2.	0.957
GRID1	GRID2IP	ENSCAPP00000003790	ENSCAPP00000006381	Glutamate ionotropic receptor delta type subunit 1.	Grid2 interacting protein.	0.808
GRID2	GRID1	ENSCAPP00000003615	ENSCAPP00000003790	Glutamate ionotropic receptor delta type subunit 2.	Glutamate ionotropic receptor delta type subunit 1.	0.957