Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCN15Lipocalin 15. (192 aa)    
Predicted Functional Partners:
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
    
   0.838
ENSCAPP00000007718
annotation not available
    
   0.811
LCN10
Lipocalin 10.
      
 0.686
LCN8
Lipocalin 8.
  
   
 0.685
ENSCAPP00000018140
annotation not available
     
 0.665
ENSCAPP00000017659
annotation not available
   
 
 0.633
CDC73
Cell division cycle 73.
   
 0.614
ATG4B
Autophagy related 4B cysteine peptidase.
    
   0.596
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.593
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.561
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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