Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RRP1Ribosomal RNA processing 1. (400 aa)    
Predicted Functional Partners:
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
   
 0.998
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.997
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.997
BRIX1
Biogenesis of ribosomes BRX1.
   
 0.997
ENSCAPP00000011601
annotation not available
   
 0.997
P2RY1
Purinergic receptor P2Y1.
   
 0.996
NOC3L
NOC3 like DNA replication regulator.
   
 0.996
RPF1
Ribosome production factor 1 homolog.
   
 0.996
ENSCAPP00000010582
annotation not available
   
 0.996
MRTO4
MRT4 homolog, ribosome maturation factor.
   
 0.996
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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