ENSCAPP00000006421 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000006421

annotation not available (89 aa)

Predicted Functional Partners:

SLAMF8

0.887

ENSCAPP00000005210

0.622

RPP40

0.584

TMEM184B

0.584

ENSCAPP00000012399

0.581

LZTS3

0.570

ENSCAPP00000015032

0.467

ENSCAPP00000012018

0.454

HDC

0.443

ENSCAPP00000016666

0.441

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000005210	ENSCAPP00000006421	ENSCAPP00000005210	ENSCAPP00000006421	annotation not available	annotation not available	0.622
ENSCAPP00000006421	ENSCAPP00000005210	ENSCAPP00000006421	ENSCAPP00000005210	annotation not available	annotation not available	0.622
ENSCAPP00000006421	ENSCAPP00000012018	ENSCAPP00000006421	ENSCAPP00000012018	annotation not available	annotation not available	0.454
ENSCAPP00000006421	ENSCAPP00000012399	ENSCAPP00000006421	ENSCAPP00000012399	annotation not available	annotation not available	0.581
ENSCAPP00000006421	ENSCAPP00000015032	ENSCAPP00000006421	ENSCAPP00000015032	annotation not available	annotation not available	0.467
ENSCAPP00000006421	ENSCAPP00000016666	ENSCAPP00000006421	ENSCAPP00000016666	annotation not available	annotation not available	0.441
ENSCAPP00000006421	HDC	ENSCAPP00000006421	ENSCAPP00000008100	annotation not available	Histidine decarboxylase.	0.443
ENSCAPP00000006421	LZTS3	ENSCAPP00000006421	ENSCAPP00000000904	annotation not available	Leucine zipper tumor suppressor family member 3.	0.570
ENSCAPP00000006421	RPP40	ENSCAPP00000006421	ENSCAPP00000002251	annotation not available	Ribonuclease P/MRP subunit p40.	0.584
ENSCAPP00000006421	SLAMF8	ENSCAPP00000006421	ENSCAPP00000001982	annotation not available	SLAM family member 8.	0.887
ENSCAPP00000006421	TMEM184B	ENSCAPP00000006421	ENSCAPP00000015812	annotation not available	Transmembrane protein 184B.	0.584
ENSCAPP00000012018	ENSCAPP00000006421	ENSCAPP00000012018	ENSCAPP00000006421	annotation not available	annotation not available	0.454
ENSCAPP00000012399	ENSCAPP00000006421	ENSCAPP00000012399	ENSCAPP00000006421	annotation not available	annotation not available	0.581
ENSCAPP00000012399	LZTS3	ENSCAPP00000012399	ENSCAPP00000000904	annotation not available	Leucine zipper tumor suppressor family member 3.	0.454
ENSCAPP00000012399	RPP40	ENSCAPP00000012399	ENSCAPP00000002251	annotation not available	Ribonuclease P/MRP subunit p40.	0.559
ENSCAPP00000012399	TMEM184B	ENSCAPP00000012399	ENSCAPP00000015812	annotation not available	Transmembrane protein 184B.	0.535
ENSCAPP00000015032	ENSCAPP00000006421	ENSCAPP00000015032	ENSCAPP00000006421	annotation not available	annotation not available	0.467
ENSCAPP00000016666	ENSCAPP00000006421	ENSCAPP00000016666	ENSCAPP00000006421	annotation not available	annotation not available	0.441
HDC	ENSCAPP00000006421	ENSCAPP00000008100	ENSCAPP00000006421	Histidine decarboxylase.	annotation not available	0.443
LZTS3	ENSCAPP00000006421	ENSCAPP00000000904	ENSCAPP00000006421	Leucine zipper tumor suppressor family member 3.	annotation not available	0.570