ENSCAPP00000006430 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000006430

annotation not available (131 aa)

Predicted Functional Partners:

ENSCAPP00000013899

0.928

ENSCAPP00000008062

0.799

CCDC113

0.763

INTS8

0.709

ENSCAPP00000018437

0.702

SACS

0.648

ENSCAPP00000005006

0.643

TMEM231

0.608

IQSEC2

0.606

ENSCAPP00000004996

0.598

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC113	ENSCAPP00000006430	ENSCAPP00000011695	ENSCAPP00000006430	Coiled-coil domain containing 113.	annotation not available	0.763
CCDC113	ENSCAPP00000008062	ENSCAPP00000011695	ENSCAPP00000008062	Coiled-coil domain containing 113.	annotation not available	0.655
CCDC113	ENSCAPP00000013899	ENSCAPP00000011695	ENSCAPP00000013899	Coiled-coil domain containing 113.	annotation not available	0.617
ENSCAPP00000004996	ENSCAPP00000006430	ENSCAPP00000004996	ENSCAPP00000006430	annotation not available	annotation not available	0.598
ENSCAPP00000005006	ENSCAPP00000006430	ENSCAPP00000005006	ENSCAPP00000006430	annotation not available	annotation not available	0.643
ENSCAPP00000006430	CCDC113	ENSCAPP00000006430	ENSCAPP00000011695	annotation not available	Coiled-coil domain containing 113.	0.763
ENSCAPP00000006430	ENSCAPP00000004996	ENSCAPP00000006430	ENSCAPP00000004996	annotation not available	annotation not available	0.598
ENSCAPP00000006430	ENSCAPP00000005006	ENSCAPP00000006430	ENSCAPP00000005006	annotation not available	annotation not available	0.643
ENSCAPP00000006430	ENSCAPP00000008062	ENSCAPP00000006430	ENSCAPP00000008062	annotation not available	annotation not available	0.799
ENSCAPP00000006430	ENSCAPP00000013899	ENSCAPP00000006430	ENSCAPP00000013899	annotation not available	annotation not available	0.928
ENSCAPP00000006430	ENSCAPP00000018437	ENSCAPP00000006430	ENSCAPP00000018437	annotation not available	annotation not available	0.702
ENSCAPP00000006430	INTS8	ENSCAPP00000006430	ENSCAPP00000007847	annotation not available	Integrator complex subunit 8.	0.709
ENSCAPP00000006430	IQSEC2	ENSCAPP00000006430	ENSCAPP00000007355	annotation not available	IQ motif and Sec7 domain ArfGEF 2.	0.606
ENSCAPP00000006430	SACS	ENSCAPP00000006430	ENSCAPP00000009627	annotation not available	Sacsin molecular chaperone.	0.648
ENSCAPP00000006430	TMEM231	ENSCAPP00000006430	ENSCAPP00000015810	annotation not available	Transmembrane protein 231.	0.608
ENSCAPP00000008062	CCDC113	ENSCAPP00000008062	ENSCAPP00000011695	annotation not available	Coiled-coil domain containing 113.	0.655
ENSCAPP00000008062	ENSCAPP00000006430	ENSCAPP00000008062	ENSCAPP00000006430	annotation not available	annotation not available	0.799
ENSCAPP00000008062	ENSCAPP00000013899	ENSCAPP00000008062	ENSCAPP00000013899	annotation not available	annotation not available	0.662
ENSCAPP00000008062	ENSCAPP00000018437	ENSCAPP00000008062	ENSCAPP00000018437	annotation not available	annotation not available	0.611
ENSCAPP00000008062	INTS8	ENSCAPP00000008062	ENSCAPP00000007847	annotation not available	Integrator complex subunit 8.	0.517