STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM4PDZ and LIM domain 4. (296 aa)    
Predicted Functional Partners:
MYO18B
Myosin XVIIIB.
   
 0.933
DUSP22
Dual specificity phosphatase 22.
    
 0.930
MYO6
Myosin VI.
    
 0.927
APC2
APC regulator of WNT signaling pathway 2.
    
  0.920
MYO1A
Myosin IA.
     
 0.919
EHBP1
EH domain binding protein 1.
   
 0.918
KPTN
Kaptin, actin binding protein.
     
 0.917
PDLIM3
PDZ and LIM domain 3.
     
0.907
ENSCAPP00000005544
annotation not available
   
 0.895
ENSCAPP00000017093
annotation not available
     
 0.874
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.