Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM4PDZ and LIM domain 4. (296 aa)    
Predicted Functional Partners:
ENSCAPP00000017093
annotation not available
   
 
 0.991
NCKAP1
NCK associated protein 1.
     
 0.974
PDLIM7
PDZ and LIM domain 7.
   
 
 0.955
ENSCAPP00000016074
annotation not available
   
 
  0.951
PDLIM3
PDZ and LIM domain 3.
     
  0.948
LDB3
LIM domain binding 3.
   
 
 0.947
MYO1A
Myosin IA.
     
 0.945
ENSCAPP00000007305
annotation not available
    
  0.943
JAM3
Junctional adhesion molecule 3.
     
  0.943
MYO1C
Myosin IC.
     
  0.942
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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