Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF2Yip1 domain family member 2. (223 aa)    
Predicted Functional Partners:
YIPF4
Yip1 domain family member 4.
    
 
 0.859
YIPF5
Yip1 domain family member 5.
   
 
 0.838
SELENOS
Selenoprotein S.
    
 
 0.738
TVP23B
Trans-golgi network vesicle protein 23 homolog B.
   
 
 0.729
TVP23A
Trans-golgi network vesicle protein 23 homolog A.
   
 
 0.729
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
   
  
 0.636
YIPF3
Yip1 domain family member 3.
   
  
 0.600
MRPL58
Mitochondrial ribosomal protein L58.
   
  
 0.588
GIGYF1
GRB10 interacting GYF protein 1.
      
 0.582
FGD1
FYVE, RhoGEF and PH domain containing 1.
      
 0.569
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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