N4BP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N4BP1

NEDD4 binding protein 1. (815 aa)

Predicted Functional Partners:

ENSCAPP00000009519

0.762

ENSCAPP00000015096

0.637

CASP10

0.624

CASP8

0.624

ENSCAPP00000006004

0.563

SEC62

0.559

SLC35A2

0.551

PARP12

0.485

RNF19B

0.447

ENSCAPP00000011344

0.443

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP10	ENSCAPP00000015096	ENSCAPP00000003418	ENSCAPP00000015096	Caspase 10.	annotation not available	0.562
CASP10	N4BP1	ENSCAPP00000003418	ENSCAPP00000006464	Caspase 10.	NEDD4 binding protein 1.	0.624
CASP8	ENSCAPP00000015096	ENSCAPP00000009261	ENSCAPP00000015096	Caspase 8.	annotation not available	0.562
CASP8	N4BP1	ENSCAPP00000009261	ENSCAPP00000006464	Caspase 8.	NEDD4 binding protein 1.	0.624
ENSCAPP00000006004	ENSCAPP00000009519	ENSCAPP00000006004	ENSCAPP00000009519	annotation not available	annotation not available	0.509
ENSCAPP00000006004	N4BP1	ENSCAPP00000006004	ENSCAPP00000006464	annotation not available	NEDD4 binding protein 1.	0.563
ENSCAPP00000009519	ENSCAPP00000006004	ENSCAPP00000009519	ENSCAPP00000006004	annotation not available	annotation not available	0.509
ENSCAPP00000009519	ENSCAPP00000011344	ENSCAPP00000009519	ENSCAPP00000011344	annotation not available	annotation not available	0.596
ENSCAPP00000009519	ENSCAPP00000015096	ENSCAPP00000009519	ENSCAPP00000015096	annotation not available	annotation not available	0.650
ENSCAPP00000009519	N4BP1	ENSCAPP00000009519	ENSCAPP00000006464	annotation not available	NEDD4 binding protein 1.	0.762
ENSCAPP00000009519	RNF19B	ENSCAPP00000009519	ENSCAPP00000005677	annotation not available	Ring finger protein 19B.	0.721
ENSCAPP00000011344	ENSCAPP00000009519	ENSCAPP00000011344	ENSCAPP00000009519	annotation not available	annotation not available	0.596
ENSCAPP00000011344	N4BP1	ENSCAPP00000011344	ENSCAPP00000006464	annotation not available	NEDD4 binding protein 1.	0.443
ENSCAPP00000015096	CASP10	ENSCAPP00000015096	ENSCAPP00000003418	annotation not available	Caspase 10.	0.562
ENSCAPP00000015096	CASP8	ENSCAPP00000015096	ENSCAPP00000009261	annotation not available	Caspase 8.	0.562
ENSCAPP00000015096	ENSCAPP00000009519	ENSCAPP00000015096	ENSCAPP00000009519	annotation not available	annotation not available	0.650
ENSCAPP00000015096	N4BP1	ENSCAPP00000015096	ENSCAPP00000006464	annotation not available	NEDD4 binding protein 1.	0.637
ENSCAPP00000015096	RNF19B	ENSCAPP00000015096	ENSCAPP00000005677	annotation not available	Ring finger protein 19B.	0.689
N4BP1	CASP10	ENSCAPP00000006464	ENSCAPP00000003418	NEDD4 binding protein 1.	Caspase 10.	0.624
N4BP1	CASP8	ENSCAPP00000006464	ENSCAPP00000009261	NEDD4 binding protein 1.	Caspase 8.	0.624