Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGAP1RAB GTPase activating protein 1. (879 aa)    
Predicted Functional Partners:
TUFT1
Tuftelin 1.
    
 
 0.772
PXDC1
PX domain containing 1.
    
   0.721
HOOK3
Hook microtubule tethering protein 3.
   
 
 0.679
RAB33A
RAB33A, member RAS oncogene family.
    
 0.608
RAB19
RAB19, member RAS oncogene family.
    
 0.606
RAB43
RAB43, member RAS oncogene family.
    
 0.606
RAB1A
RAB1A, member RAS oncogene family.
    
 0.596
RAB1B
RAB1B, member RAS oncogene family.
    
 0.596
RABL6
RAB, member RAS oncogene family like 6.
    
 0.594
FILIP1L
Filamin A interacting protein 1 like.
    
 0.594
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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