STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARID5BAT-rich interaction domain 5B. (1106 aa)    
Predicted Functional Partners:
SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
    
 0.805
PBRM1
Polybromo 1.
   
 0.792
PHF2
PHD finger protein 2.
     
 0.790
ACTL6A
Actin like 6A.
    
 0.784
HDAC1
Histone deacetylase 1.
    
 0.746
HDAC2
Histone deacetylase 2.
    
 0.719
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.686
ENSCAPP00000016152
annotation not available
     
 0.664
HDAC3
Histone deacetylase 3.
    
 0.657
BRMS1
BRMS1 transcriptional repressor and anoikis regulator.
    
 0.651
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.