Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THBS4Thrombospondin 4. (671 aa)    
Predicted Functional Partners:
ENSCAPP00000015526
annotation not available
   
 
 0.980
ITGA1
Integrin subunit alpha 1.
    
 0.943
SDC4
Syndecan 4.
    
 0.938
ITGA5
Integrin subunit alpha 5.
    
 0.936
ENSCAPP00000016364
annotation not available
   
 0.934
ITGA4
Integrin subunit alpha 4.
    
 0.929
ITGB7
Integrin subunit beta 7.
    
 0.929
ITGB5
Integrin subunit beta 5.
    
 0.928
ITGB1
Integrin subunit beta 1.
    
 0.927
DIP2C
Disco interacting protein 2 homolog C.
    
 0.926
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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