ENSCAPP00000006485 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000006485

annotation not available (249 aa)

Predicted Functional Partners:

SIN3B

0.990

HDAC1

0.986

SIN3A

0.984

EMSY

0.976

HDAC2

0.971

ENSCAPP00000006586

0.966

ENSCAPP00000000270

0.965

ENSCAPP00000013350

0.965

ENSCAPP00000018476

0.939

ENSCAPP00000004430

0.936

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EMSY	ENSCAPP00000000270	ENSCAPP00000013941	ENSCAPP00000000270	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.724
EMSY	ENSCAPP00000004430	ENSCAPP00000013941	ENSCAPP00000004430	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.859
EMSY	ENSCAPP00000006485	ENSCAPP00000013941	ENSCAPP00000006485	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.976
EMSY	ENSCAPP00000006586	ENSCAPP00000013941	ENSCAPP00000006586	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.858
EMSY	ENSCAPP00000013350	ENSCAPP00000013941	ENSCAPP00000013350	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.718
EMSY	ENSCAPP00000018476	ENSCAPP00000013941	ENSCAPP00000018476	EMSY transcriptional repressor, BRCA2 interacting.	annotation not available	0.829
EMSY	HDAC1	ENSCAPP00000013941	ENSCAPP00000015327	EMSY transcriptional repressor, BRCA2 interacting.	Histone deacetylase 1.	0.970
EMSY	HDAC2	ENSCAPP00000013941	ENSCAPP00000016491	EMSY transcriptional repressor, BRCA2 interacting.	Histone deacetylase 2.	0.909
EMSY	SIN3A	ENSCAPP00000013941	ENSCAPP00000010185	EMSY transcriptional repressor, BRCA2 interacting.	SIN3 transcription regulator family member A.	0.953
EMSY	SIN3B	ENSCAPP00000013941	ENSCAPP00000000416	EMSY transcriptional repressor, BRCA2 interacting.	SIN3 transcription regulator family member B.	0.988
ENSCAPP00000000270	EMSY	ENSCAPP00000000270	ENSCAPP00000013941	annotation not available	EMSY transcriptional repressor, BRCA2 interacting.	0.724
ENSCAPP00000000270	ENSCAPP00000004430	ENSCAPP00000000270	ENSCAPP00000004430	annotation not available	annotation not available	0.644
ENSCAPP00000000270	ENSCAPP00000006485	ENSCAPP00000000270	ENSCAPP00000006485	annotation not available	annotation not available	0.965
ENSCAPP00000000270	ENSCAPP00000006586	ENSCAPP00000000270	ENSCAPP00000006586	annotation not available	annotation not available	0.811
ENSCAPP00000000270	ENSCAPP00000013350	ENSCAPP00000000270	ENSCAPP00000013350	annotation not available	annotation not available	0.811
ENSCAPP00000000270	ENSCAPP00000018476	ENSCAPP00000000270	ENSCAPP00000018476	annotation not available	annotation not available	0.996
ENSCAPP00000000270	HDAC1	ENSCAPP00000000270	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.995
ENSCAPP00000000270	HDAC2	ENSCAPP00000000270	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.983
ENSCAPP00000000270	SIN3A	ENSCAPP00000000270	ENSCAPP00000010185	annotation not available	SIN3 transcription regulator family member A.	0.997
ENSCAPP00000000270	SIN3B	ENSCAPP00000000270	ENSCAPP00000000416	annotation not available	SIN3 transcription regulator family member B.	0.996