CD74 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CD74

CD74 molecule. (298 aa)

Predicted Functional Partners:

ENSCAPP00000012282

0.999

ENSCAPP00000018659

0.999

ENSCAPP00000000576

0.998

ENSCAPP00000004781

0.998

ENSCAPP00000006028

0.998

ENSCAPP00000009223

0.998

RPS7

0.998

RPS9

0.998

ENSCAPP00000013842

0.998

ENSCAPP00000015046

0.998

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD74	ENSCAPP00000000576	ENSCAPP00000006497	ENSCAPP00000000576	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000004781	ENSCAPP00000006497	ENSCAPP00000004781	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000006028	ENSCAPP00000006497	ENSCAPP00000006028	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000009223	ENSCAPP00000006497	ENSCAPP00000009223	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000012282	ENSCAPP00000006497	ENSCAPP00000012282	CD74 molecule.	annotation not available	0.999
CD74	ENSCAPP00000013842	ENSCAPP00000006497	ENSCAPP00000013842	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000015046	ENSCAPP00000006497	ENSCAPP00000015046	CD74 molecule.	annotation not available	0.998
CD74	ENSCAPP00000018659	ENSCAPP00000006497	ENSCAPP00000018659	CD74 molecule.	annotation not available	0.999
CD74	RPS7	ENSCAPP00000006497	ENSCAPP00000011311	CD74 molecule.	Ribosomal protein S7.	0.998
CD74	RPS9	ENSCAPP00000006497	ENSCAPP00000012452	CD74 molecule.	Ribosomal protein S9.	0.998
ENSCAPP00000000576	CD74	ENSCAPP00000000576	ENSCAPP00000006497	annotation not available	CD74 molecule.	0.998
ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	annotation not available	annotation not available	0.990
ENSCAPP00000000576	ENSCAPP00000006028	ENSCAPP00000000576	ENSCAPP00000006028	annotation not available	annotation not available	0.999
ENSCAPP00000000576	ENSCAPP00000009223	ENSCAPP00000000576	ENSCAPP00000009223	annotation not available	annotation not available	0.999
ENSCAPP00000000576	ENSCAPP00000013842	ENSCAPP00000000576	ENSCAPP00000013842	annotation not available	annotation not available	0.999
ENSCAPP00000000576	ENSCAPP00000015046	ENSCAPP00000000576	ENSCAPP00000015046	annotation not available	annotation not available	0.998
ENSCAPP00000000576	RPS7	ENSCAPP00000000576	ENSCAPP00000011311	annotation not available	Ribosomal protein S7.	0.999
ENSCAPP00000000576	RPS9	ENSCAPP00000000576	ENSCAPP00000012452	annotation not available	Ribosomal protein S9.	0.999
ENSCAPP00000004781	CD74	ENSCAPP00000004781	ENSCAPP00000006497	annotation not available	CD74 molecule.	0.998
ENSCAPP00000004781	ENSCAPP00000000576	ENSCAPP00000004781	ENSCAPP00000000576	annotation not available	annotation not available	0.990