Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RFX3Regulatory factor X3. (649 aa)    
Predicted Functional Partners:
RFX2
Regulatory factor X2.
   
   0.990
FOXJ1
Forkhead box J1.
    
 
 0.981
RFX1
Regulatory factor X1.
   
   0.960
FOXN3
Forkhead box N3.
    
 
 0.851
ENSCAPP00000002259
annotation not available
    
 0.846
RORA
RAR related orphan receptor A.
      
 0.846
FHL2
Four and a half LIM domains 2.
    
 
 0.838
ATR
ATR serine/threonine kinase.
    
 
 0.805
PABPC5
poly(A) binding protein cytoplasmic 5.
    
   0.781
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
    
   0.775
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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