Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006560annotation not available (468 aa)    
Predicted Functional Partners:
VPS52
VPS52 subunit of GARP complex.
      
 0.662
ARL14EP
ADP ribosylation factor like GTPase 14 effector protein.
      
 0.564
C1QTNF12
C1q and TNF related 12.
      
 0.550
TDRD7
Tudor domain containing 7.
      
 0.450
ZNF142
Zinc finger protein 142.
      
 0.437
ENSCAPP00000003614
annotation not available
      
 0.410
ZC3H6
Zinc finger CCCH-type containing 6.
      
 0.410
CRYGS
Crystallin gamma S.
      
 0.410
ENSCAPP00000006850
annotation not available
      
 0.408
CRYGN
Crystallin gamma N.
      
 0.408
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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