WASHC4 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WASHC4

WASH complex subunit 4. (1151 aa)

Predicted Functional Partners:

WASHC5

0.994

ENSCAPP00000001031

0.986

WASHC1

0.985

ENSCAPP00000015841

0.985

CAPZB

0.955

CAPZA1

0.953

SNX27

0.950

ENSCAPP00000012968

0.943

TBC1D23

0.931

HPS5

0.924

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPZA1	CAPZB	ENSCAPP00000017322	ENSCAPP00000001527	Capping actin protein of muscle Z-line subunit alpha 1.	Capping actin protein of muscle Z-line subunit beta.	0.998
CAPZA1	ENSCAPP00000001031	ENSCAPP00000017322	ENSCAPP00000001031	Capping actin protein of muscle Z-line subunit alpha 1.	annotation not available	0.936
CAPZA1	ENSCAPP00000015841	ENSCAPP00000017322	ENSCAPP00000015841	Capping actin protein of muscle Z-line subunit alpha 1.	annotation not available	0.931
CAPZA1	SNX27	ENSCAPP00000017322	ENSCAPP00000004025	Capping actin protein of muscle Z-line subunit alpha 1.	Sorting nexin 27.	0.923
CAPZA1	WASHC1	ENSCAPP00000017322	ENSCAPP00000005849	Capping actin protein of muscle Z-line subunit alpha 1.	WASH complex subunit 1.	0.939
CAPZA1	WASHC4	ENSCAPP00000017322	ENSCAPP00000006566	Capping actin protein of muscle Z-line subunit alpha 1.	WASH complex subunit 4.	0.953
CAPZA1	WASHC5	ENSCAPP00000017322	ENSCAPP00000009580	Capping actin protein of muscle Z-line subunit alpha 1.	WASH complex subunit 5.	0.962
CAPZB	CAPZA1	ENSCAPP00000001527	ENSCAPP00000017322	Capping actin protein of muscle Z-line subunit beta.	Capping actin protein of muscle Z-line subunit alpha 1.	0.998
CAPZB	ENSCAPP00000001031	ENSCAPP00000001527	ENSCAPP00000001031	Capping actin protein of muscle Z-line subunit beta.	annotation not available	0.939
CAPZB	ENSCAPP00000012968	ENSCAPP00000001527	ENSCAPP00000012968	Capping actin protein of muscle Z-line subunit beta.	annotation not available	0.910
CAPZB	ENSCAPP00000015841	ENSCAPP00000001527	ENSCAPP00000015841	Capping actin protein of muscle Z-line subunit beta.	annotation not available	0.964
CAPZB	SNX27	ENSCAPP00000001527	ENSCAPP00000004025	Capping actin protein of muscle Z-line subunit beta.	Sorting nexin 27.	0.928
CAPZB	WASHC1	ENSCAPP00000001527	ENSCAPP00000005849	Capping actin protein of muscle Z-line subunit beta.	WASH complex subunit 1.	0.942
CAPZB	WASHC4	ENSCAPP00000001527	ENSCAPP00000006566	Capping actin protein of muscle Z-line subunit beta.	WASH complex subunit 4.	0.955
CAPZB	WASHC5	ENSCAPP00000001527	ENSCAPP00000009580	Capping actin protein of muscle Z-line subunit beta.	WASH complex subunit 5.	0.972
ENSCAPP00000001031	CAPZA1	ENSCAPP00000001031	ENSCAPP00000017322	annotation not available	Capping actin protein of muscle Z-line subunit alpha 1.	0.936
ENSCAPP00000001031	CAPZB	ENSCAPP00000001031	ENSCAPP00000001527	annotation not available	Capping actin protein of muscle Z-line subunit beta.	0.939
ENSCAPP00000001031	ENSCAPP00000012968	ENSCAPP00000001031	ENSCAPP00000012968	annotation not available	annotation not available	0.929
ENSCAPP00000001031	ENSCAPP00000015841	ENSCAPP00000001031	ENSCAPP00000015841	annotation not available	annotation not available	0.987
ENSCAPP00000001031	SNX27	ENSCAPP00000001031	ENSCAPP00000004025	annotation not available	Sorting nexin 27.	0.956