STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006567annotation not available (2666 aa)    
Predicted Functional Partners:
COL4A2
Collagen type IV alpha 2 chain.
   
0.914
COL4A4
Collagen type IV alpha 4 chain.
   
 
0.825
COL4A1
Collagen type IV alpha 1 chain.
    
0.783
ITGA1
Integrin subunit alpha 1.
     
 0.756
ITGAV
Integrin subunit alpha V.
    
 0.726
ITGB1
Integrin subunit beta 1.
    
 0.725
ENSCAPP00000016185
annotation not available
    
 0.725
ITGB5
Integrin subunit beta 5.
    
 0.725
ITGA3
Integrin subunit alpha 3.
    
 0.717
ITGB6
Integrin subunit beta 6.
    
 0.715
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.