Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAX6Paired box 6. (436 aa)    
Predicted Functional Partners:
FOXJ2
Forkhead box J2.
    
 0.948
RFX1
Regulatory factor X1.
      
 0.935
NEUROD4
Neuronal differentiation 4.
   
 0.920
GFAP
Glial fibrillary acidic protein.
   
 
 0.882
IPO13
Importin 13.
    
 
 0.876
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.869
INS
Insulin.
   
 0.846
MYB
MYB proto-oncogene, transcription factor.
     
 0.831
ENSCAPP00000012723
annotation not available
    
 
 0.829
ENSCAPP00000003716
annotation not available
   
 0.818
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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