STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000006573annotation not available (131 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
    
 0.988
ENSCAPP00000001654
annotation not available
   
 0.986
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.983
SF3B3
Splicing factor 3b subunit 3.
    
 0.968
ENSCAPP00000009270
annotation not available
   
 0.964
SF3B2
Splicing factor 3b subunit 2.
   
 0.952
SNRPB2
Small nuclear ribonucleoprotein polypeptide B2.
    
 0.941
PHF5A
PHD finger protein 5A.
    
 0.920
SNRPN
Small nuclear ribonucleoprotein polypeptide N.
    
  0.917
SF3B4
Splicing factor 3b subunit 4.
    
 0.917
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.