ENSCAPP00000006584 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCAPP00000006584

annotation not available (306 aa)

Predicted Functional Partners:

ENSCAPP00000010775

0.983

KRT71

0.957

DSG4

0.882

DSG1

0.863

DSG3

0.805

DSG2

0.805

KRT27

0.673

CCHCR1

0.657

KRT5

0.644

ENSCAPP00000017436

0.622

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCHCR1	ENSCAPP00000006584	ENSCAPP00000009459	ENSCAPP00000006584	Coiled-coil alpha-helical rod protein 1.	annotation not available	0.657
CCHCR1	KRT71	ENSCAPP00000009459	ENSCAPP00000016655	Coiled-coil alpha-helical rod protein 1.	Keratin 71.	0.414
DSG1	DSG2	ENSCAPP00000004744	ENSCAPP00000010437	Desmoglein 1.	Desmoglein 2.	0.917
DSG1	DSG3	ENSCAPP00000004744	ENSCAPP00000004639	Desmoglein 1.	Desmoglein 3.	0.919
DSG1	DSG4	ENSCAPP00000004744	ENSCAPP00000004049	Desmoglein 1.	Desmoglein 4.	0.912
DSG1	ENSCAPP00000006584	ENSCAPP00000004744	ENSCAPP00000006584	Desmoglein 1.	annotation not available	0.863
DSG1	ENSCAPP00000010775	ENSCAPP00000004744	ENSCAPP00000010775	Desmoglein 1.	annotation not available	0.872
DSG1	KRT5	ENSCAPP00000004744	ENSCAPP00000009240	Desmoglein 1.	Keratin 5.	0.819
DSG1	KRT71	ENSCAPP00000004744	ENSCAPP00000016655	Desmoglein 1.	Keratin 71.	0.859
DSG2	DSG1	ENSCAPP00000010437	ENSCAPP00000004744	Desmoglein 2.	Desmoglein 1.	0.917
DSG2	DSG3	ENSCAPP00000010437	ENSCAPP00000004639	Desmoglein 2.	Desmoglein 3.	0.912
DSG2	DSG4	ENSCAPP00000010437	ENSCAPP00000004049	Desmoglein 2.	Desmoglein 4.	0.912
DSG2	ENSCAPP00000006584	ENSCAPP00000010437	ENSCAPP00000006584	Desmoglein 2.	annotation not available	0.805
DSG2	ENSCAPP00000010775	ENSCAPP00000010437	ENSCAPP00000010775	Desmoglein 2.	annotation not available	0.861
DSG2	KRT5	ENSCAPP00000010437	ENSCAPP00000009240	Desmoglein 2.	Keratin 5.	0.709
DSG2	KRT71	ENSCAPP00000010437	ENSCAPP00000016655	Desmoglein 2.	Keratin 71.	0.805
DSG3	DSG1	ENSCAPP00000004639	ENSCAPP00000004744	Desmoglein 3.	Desmoglein 1.	0.919
DSG3	DSG2	ENSCAPP00000004639	ENSCAPP00000010437	Desmoglein 3.	Desmoglein 2.	0.912
DSG3	DSG4	ENSCAPP00000004639	ENSCAPP00000004049	Desmoglein 3.	Desmoglein 4.	0.912
DSG3	ENSCAPP00000006584	ENSCAPP00000004639	ENSCAPP00000006584	Desmoglein 3.	annotation not available	0.805