STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC6Structural maintenance of chromosomes 6. (968 aa)    
Predicted Functional Partners:
SMC5
Structural maintenance of chromosomes 5.
   
0.999
NSMCE1
NSE1 homolog, SMC5-SMC6 complex component.
    
 0.999
NSMCE2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
    
 0.999
RANBP2
RAN binding protein 2.
  
 0.999
NSMCE4A
NSE4 homolog A, SMC5-SMC6 complex component.
   
 0.999
PAXIP1
PAX interacting protein 1.
   
 
 0.971
ENSCAPP00000013457
annotation not available
   
 0.962
STAG1
Stromal antigen 1.
   
 0.957
ENSCAPP00000008632
annotation not available
   
 0.957
ENSCAPP00000010990
annotation not available
   
 0.957
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.