STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YTHDC1YTH domain containing 1. (596 aa)    
Predicted Functional Partners:
ENSCAPP00000002198
annotation not available
    
 0.974
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.969
ENSCAPP00000007721
annotation not available
   
 0.947
NUDT21
Nudix hydrolase 21.
    
 0.931
CSTF1
Cleavage stimulation factor subunit 1.
    
 0.923
CSTF3
Cleavage stimulation factor subunit 3.
    
 
 0.916
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.861
CLP1
Cleavage and polyadenylation factor I subunit 1.
    
 0.824
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 0.770
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.750
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.