LHX6 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LHX6

LIM homeobox 6. (205 aa)

Predicted Functional Partners:

LDB1

0.877

LDB2

0.764

ENSCAPP00000006620

0.679

SRF

0.615

GATA3

0.600

ENSCAPP00000006136

0.593

ENSCAPP00000006686

0.593

GATA1

0.567

SSBP2

0.548

PDE1C

0.544

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000006136	ENSCAPP00000006620	ENSCAPP00000006136	ENSCAPP00000006620	annotation not available	annotation not available	0.698
ENSCAPP00000006136	GATA3	ENSCAPP00000006136	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.641
ENSCAPP00000006136	LDB1	ENSCAPP00000006136	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.657
ENSCAPP00000006136	LDB2	ENSCAPP00000006136	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.657
ENSCAPP00000006136	LHX6	ENSCAPP00000006136	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.593
ENSCAPP00000006136	SRF	ENSCAPP00000006136	ENSCAPP00000004937	annotation not available	Serum response factor.	0.951
ENSCAPP00000006620	ENSCAPP00000006136	ENSCAPP00000006620	ENSCAPP00000006136	annotation not available	annotation not available	0.698
ENSCAPP00000006620	ENSCAPP00000006686	ENSCAPP00000006620	ENSCAPP00000006686	annotation not available	annotation not available	0.698
ENSCAPP00000006620	GATA1	ENSCAPP00000006620	ENSCAPP00000018244	annotation not available	GATA binding protein 1.	0.661
ENSCAPP00000006620	GATA3	ENSCAPP00000006620	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.534
ENSCAPP00000006620	LDB1	ENSCAPP00000006620	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.674
ENSCAPP00000006620	LDB2	ENSCAPP00000006620	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.674
ENSCAPP00000006620	LHX6	ENSCAPP00000006620	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.679
ENSCAPP00000006686	ENSCAPP00000006620	ENSCAPP00000006686	ENSCAPP00000006620	annotation not available	annotation not available	0.698
ENSCAPP00000006686	GATA3	ENSCAPP00000006686	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.634
ENSCAPP00000006686	LDB1	ENSCAPP00000006686	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.657
ENSCAPP00000006686	LDB2	ENSCAPP00000006686	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.657
ENSCAPP00000006686	LHX6	ENSCAPP00000006686	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.593
ENSCAPP00000006686	SRF	ENSCAPP00000006686	ENSCAPP00000004937	annotation not available	Serum response factor.	0.847
GATA1	ENSCAPP00000006620	ENSCAPP00000018244	ENSCAPP00000006620	GATA binding protein 1.	annotation not available	0.661