LHX6 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

LHX6

LIM homeobox 6. (205 aa)

Predicted Functional Partners:

LDB1

0.984

SSBP2

0.958

ENSCAPP00000009246

0.908

LDB2

0.862

ENSCAPP00000006620

0.861

ENSCAPP00000008852

0.825

ENSCAPP00000009788

0.825

ENSCAPP00000016206

0.825

ATG2B

0.804

PDE1C

0.689

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	ENSCAPP00000009246	ENSCAPP00000011608	ENSCAPP00000009246	Autophagy related 2B.	annotation not available	0.997
ATG2B	LHX6	ENSCAPP00000011608	ENSCAPP00000006617	Autophagy related 2B.	LIM homeobox 6.	0.804
ENSCAPP00000006620	LDB1	ENSCAPP00000006620	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.568
ENSCAPP00000006620	LDB2	ENSCAPP00000006620	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.568
ENSCAPP00000006620	LHX6	ENSCAPP00000006620	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.861
ENSCAPP00000008852	ENSCAPP00000009788	ENSCAPP00000008852	ENSCAPP00000009788	annotation not available	annotation not available	0.419
ENSCAPP00000008852	LDB1	ENSCAPP00000008852	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.885
ENSCAPP00000008852	LDB2	ENSCAPP00000008852	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.728
ENSCAPP00000008852	LHX6	ENSCAPP00000008852	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.825
ENSCAPP00000008852	SSBP2	ENSCAPP00000008852	ENSCAPP00000015338	annotation not available	Single stranded DNA binding protein 2.	0.892
ENSCAPP00000009246	ATG2B	ENSCAPP00000009246	ENSCAPP00000011608	annotation not available	Autophagy related 2B.	0.997
ENSCAPP00000009246	LHX6	ENSCAPP00000009246	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.908
ENSCAPP00000009788	ENSCAPP00000008852	ENSCAPP00000009788	ENSCAPP00000008852	annotation not available	annotation not available	0.419
ENSCAPP00000009788	LDB1	ENSCAPP00000009788	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.885
ENSCAPP00000009788	LDB2	ENSCAPP00000009788	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.728
ENSCAPP00000009788	LHX6	ENSCAPP00000009788	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.825
ENSCAPP00000009788	SSBP2	ENSCAPP00000009788	ENSCAPP00000015338	annotation not available	Single stranded DNA binding protein 2.	0.892
ENSCAPP00000016206	LDB1	ENSCAPP00000016206	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.884
ENSCAPP00000016206	LDB2	ENSCAPP00000016206	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.728
ENSCAPP00000016206	LHX6	ENSCAPP00000016206	ENSCAPP00000006617	annotation not available	LIM homeobox 6.	0.825