STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Helicase for meiosis 1. (1029 aa)    
Predicted Functional Partners:
SEC63
SEC63 homolog, protein translocation regulator.
     
 0.996
ENSCAPP00000010752
annotation not available
    
 0.979
PRPF8
pre-mRNA processing factor 8.
   
 0.973
TRIP4
Thyroid hormone receptor interactor 4.
    
 0.972
PRPF6
pre-mRNA processing factor 6.
   
 0.960
SF3B3
Splicing factor 3b subunit 3.
   
 0.958
ENSCAPP00000012207
annotation not available
    
 0.955
SF3B1
Splicing factor 3b subunit 1.
   
 0.953
XAB2
XPA binding protein 2.
    
 0.953
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.953
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.