Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC9Trafficking protein particle complex 9. (845 aa)    
Predicted Functional Partners:
TRAPPC2L
Trafficking protein particle complex 2 like.
    
 0.996
ENSCAPP00000011394
annotation not available
   
 0.996
ENSCAPP00000017935
annotation not available
   
 0.996
TRAPPC6A
Trafficking protein particle complex 6A.
   
 0.995
TRAPPC5
Trafficking protein particle complex 5.
    
 0.995
TRAPPC1
Trafficking protein particle complex 1.
    
 0.995
ENSCAPP00000007397
annotation not available
    
 0.990
TRAPPC3L
Trafficking protein particle complex 3 like.
    
 0.990
ENSCAPP00000010783
annotation not available
    
 0.982
ENSCAPP00000013526
annotation not available
    
 0.982
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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