Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLBP1Retinaldehyde binding protein 1. (317 aa)    
Predicted Functional Partners:
DGAT2L6
Diacylglycerol O-acyltransferase 2 like 6.
     
  0.920
ENSCAPP00000010601
annotation not available
    
 0.896
RDH12
Retinol dehydrogenase 12.
    
 0.886
ENSCAPP00000010012
annotation not available
    
 0.840
ENSCAPP00000015436
annotation not available
    
 0.840
RDH8
Retinol dehydrogenase 8.
    
 0.770
RDH13
Retinol dehydrogenase 13.
    
 0.725
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 
 0.713
RPE65
Retinoid isomerohydrolase RPE65.
   
  
 0.698
GNAT2
G protein subunit alpha transducin 2.
    
 
 0.690
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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