STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UROSUroporphyrinogen III synthase. (183 aa)    
Predicted Functional Partners:
HMBS
Hydroxymethylbilane synthase.
  
 0.997
ALAD
Aminolevulinate dehydratase.
  
 0.991
UROD
Uroporphyrinogen decarboxylase.
  
 
 0.989
KNG1
Kininogen 1.
     
 0.878
ENSCAPP00000009962
annotation not available
  
 
 0.857
FECH
Ferrochelatase.
  
  
 0.828
PRDM5
PR/SET domain 5.
    
 
 0.803
ENSCAPP00000011099
annotation not available
   
  
 0.766
ENSCAPP00000017743
annotation not available
      
 0.742
DDX42
DEAD-box helicase 42.
  
  
 0.698
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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