STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (358 aa)    
Predicted Functional Partners:
LIG4
DNA ligase 4.
    
 0.943
XRCC6
X-ray repair cross complementing 6.
    
 0.932
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
    
 0.877
BARD1
BRCA1 associated RING domain 1.
    
 0.857
ATM
ATM serine/threonine kinase.
    
 0.849
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
   
 0.846
ENSCAPP00000013410
annotation not available
     
 0.826
POLD1
DNA polymerase delta 1, catalytic subunit.
     
 0.820
MSH6
mutS homolog 6.
   
 
 0.815
MSH2
mutS homolog 2.
   
 
 0.814
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.