Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (358 aa)    
Predicted Functional Partners:
LIG4
DNA ligase 4.
    
 0.859
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
    
 0.834
XRCC6
X-ray repair cross complementing 6.
    
 0.807
ATM
ATM serine/threonine kinase.
    
 0.689
CYREN
Cell cycle regulator of NHEJ.
    
 0.673
CDK1
Cyclin dependent kinase 1.
    
 0.664
CDK15
Cyclin dependent kinase 15.
    
 0.664
CDK17
Cyclin dependent kinase 17.
    
 0.664
CDK2
Cyclin dependent kinase 2.
    
 0.664
CDK4
Cyclin dependent kinase 4.
    
 0.664
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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