Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRP54Signal recognition particle 54. (429 aa)    
Predicted Functional Partners:
ENSCAPP00000004029
annotation not available
    
 0.999
ENSCAPP00000013443
annotation not available
   
 0.999
SRP68
Signal recognition particle 68.
   
 0.999
SRP72
Signal recognition particle 72.
   
 0.999
SRPRA
SRP receptor subunit alpha.
  
 0.984
RHO
Rhodopsin.
    
 
 0.931
RPS9
Ribosomal protein S9.
  
 
 0.928
RPL23
Ribosomal protein L23.
  
 
 0.924
SEC63
SEC63 homolog, protein translocation regulator.
   
  
 0.921
ENSCAPP00000018369
annotation not available
  
   0.902
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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